1E0X

XYLANASE 10A FROM SREPTOMYCES LIVIDANS. XYLOBIOSYL-ENZYME INTERMEDIATE AT 1.65 A

Structural Biology Knowledgebase: 1E0X SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.65 Å
  • R-Value Free: 0.162
  • R-Value Work: 0.126

Literature

Macromolecules
Sequence Display for 1E0X

Classification: HYDROLASE

Total Structure Weight: 69104.23

Macromolecule Entities
Molecule Chains Length Organism Details
ENDO-1,4-BETA-XYLANASE A A, B 313 Streptomyces lividans EC#: 3.2.1.8 IUBMB
Fragment: CATALYTIC MODULE, RESIDUES 32-450
Details: GLYCOSYL ENXYME INTERMEDIATE. COVALENT LINK BETWEEN GLU 236 AND THE SUBSTRATE
Gene Name(s): xlnA
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
X2F
Query on X2F

A, B 2-DEOXY-2-FLUORO XYLOPYRANOSE
C5 H9 F O4
YVMHSZGJGHRGOD-MBMOQRBOSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
XYP
Query on XYP

A, B BETA-D-XYLOPYRANOSE
C5 H10 O5
SRBFZHDQGSBBOR-KKQCNMDGSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A, B GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.65 Å
  • R-Value Free: 0.162
  • R-Value Work: 0.126
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 49.21 α = 90.00
b = 81.06 β = 102.79
c = 72.81 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-04-10
  • Released Date: 2001-04-05
  • Deposition author(s): Ducros, V., Charnock, S.J., Derewenda, U., Derewenda, Z.S., Dauter, Z., Dupont, C., Shareck, F., Morosoli, R., Kluepfel, D., Davies, G.J.

Revision History

  • 2011-08-31
    Type: Function and keywords | Details: KEYWDS
  • 2011-08-31
    Type: Other | Details: TER,HEADER,REMARK 525,REMARK 280
  • 2011-08-31
    Type: Atom nomenclature | Details: ATOM,HETATM
  • 2011-08-31
    Type: Biological assembly | Details: REMARK 300,REMARK 350
  • 2011-08-31
    Type: Version format compliance | Details: REMARK 4
  • 2011-08-31
    Type: Polymer description | Details: COMPND
  • 2011-08-31
    Type: Citation | Details: REMARK 1
  • 2011-08-31
    Type: Binding sites and description | Details: REMARK 800,SITE
  • 2011-08-31
    Type: Non-polymer description | Details: HETSYN,FORMUL
  • 2011-08-31
    Type: Geometry validation | Details: REMARK 500