1E04

PLASMA BETA ANTITHROMBIN-III

Structural Biology Knowledgebase: 1E04 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.243
  • R-Value Work: 0.205

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1E04

Classification: BLOOD CLOTTING

Total Structure Weight: 101857.31

Macromolecule Entities
Molecule Chains Length Organism Details
ANTITHROMBIN-III I, L 432 Homo sapiens Gene Name(s): SERPINC1 Gene View AT3 PRO0309

Small Molecules
Ligands 5 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
BMA
Query on BMA

I, L BETA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-RWOPYEJCSA-N
Ligand Explorer
 
JSmol
GOL
Query on GOL

I, L GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
MAN
Query on MAN

I, L ALPHA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-PQMKYFCFSA-N
Ligand Explorer
 
JSmol
NAG
Query on NAG

I, L N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer
 
JSmol
PO4
Query on PO4

L PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer
 
JSmol

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.243
  • R-Value Work: 0.205
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 62.05 α = 90.00
b = 99.34 β = 102.29
c = 88.59 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-03-09
  • Released Date: 2000-06-02
  • Deposition author(s): Mccoy, A.J., Skinner, R., Abrahams, J.-P., Pei, X.Y., Carrell, R.W.

Revision History

  • 2011-08-17
    Type: Linkage | Details: LINK
  • 2011-08-17
    Type: Version format compliance | Details: REMARK 4
  • 2011-08-17
    Type: Other | Details: REMARK 525,MASTER,REMARK 280
  • 2011-08-17
    Type: Atom nomenclature | Details: HETATM
  • 2011-08-17
    Type: Biological assembly | Details: REMARK 300,REMARK 350
  • 2011-08-17
    Type: Geometry validation | Details: REMARK 500
  • 2011-08-17
    Type: Binding sites and description | Details: REMARK 800,SITE
  • 2011-08-17
    Type: Non-polymer description | Details: HET,HETSYN,FORMUL