1DZN

ASP170SER MUTANT OF VANILLYL-ALCOHOL OXIDASE

Structural Biology Knowledgebase: 1DZN SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.291
  • R-Value Work: 0.227

Literature

Macromolecules
Sequence Display for 1DZN

Classification: FLAVIN-DEPENDENT OXIDASE ENZYME

Total Structure Weight: 127714.59

Macromolecule Entities
Molecule Chains Length Organism Details
VANILLYL-ALCOHOL OXIDASE A, B 560 Penicillium simplicissimum EC#: 1.1.3.38 IUBMB
Mutation: E6A, R274G
Details: LINK BETWEEN HIS422 AND FLAVIN RING
Gene Name(s): VAOA
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FAD
Query on FAD

A, B FLAVIN-ADENINE DINUCLEOTIDE
C27 H33 N9 O15 P2
VWWQXMAJTJZDQX-UYBVJOGSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EUG
Query on EUG

A, B 2-methoxy-4-[(1E)-prop-1-en-1-yl]phenol
Isoeugenol (Synonym)
C10 H12 O2
BJIOGJUNALELMI-ONEGZZNKSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.291
  • R-Value Work: 0.227
  • Space Group: I 4
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 131.33 α = 90.00
b = 131.33 β = 90.00
c = 134.66 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-03-05
  • Released Date: 2000-03-07
  • Deposition author(s): Van Den Heuvel, R.H.H., Fraaije, M.W., Van Berkel, W.J.H., Mattevi, A.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4