1DZI

INTEGRIN ALPHA2 I DOMAIN / COLLAGEN COMPLEX

Structural Biology Knowledgebase: 1DZI SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Observed: 0.200

Literature

Macromolecules
Sequence Display for 1DZI

Classification: INTEGRIN

Total Structure Weight: 26457.59

Macromolecule Entities
Molecule Chains Length Organism Details
INTEGRIN A 185 Homo sapiens Fragment: ALPHA2 I DOMAIN
Mutation: S142A
Gene Name(s): ITGA2 Gene View CD49B
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
COLLAGEN B, C, D 22 synthetic Fragment: TRIMERIC GPOGPOGFOGERGPOGPOGPO 21MERIC PEPTIDE

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CO
Query on CO

F COBALT (II) ION
Co
XLJKHNWPARRRJB-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 2 Unique
ID Chains Type Formula 2D Diagram Parent
HYP
Query on HYP
B, C, D L-PEPTIDE LINKING C5 H9 N O3 PRO
NH2
Query on NH2
B, C, D NON-POLYMER H2 N --

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Observed: 0.200
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 41.99 α = 90.00
b = 48.38 β = 90.00
c = 114.54 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-03-01
  • Released Date: 2001-03-01
  • Deposition author(s): Emsley, J., Knight, G., Farndale, R., Barnes, M., Liddington, R.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4