1DYI

ISOMORPHOUS CRYSTAL STRUCTURES OF ESCHERICHIA COLI DIHYDROFOLATE REDUCTASE COMPLEXED WITH FOLATE, 5-DEAZAFOLATE AND 5,10-DIDEAZATETRAHYDROFOLATE: MECHANISTIC IMPLICATIONS

Structural Biology Knowledgebase: 1DYI SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Observed: 0.137

Literature

Macromolecules
Sequence Display for 1DYI

Classification: OXIDOREDUCTASE

Total Structure Weight: 37034.74

Macromolecule Entities
Molecule Chains Length Organism Details
DIHYDROFOLATE REDUCTASE A, B 159 Escherichia coli EC#: 1.5.1.3 IUBMB
Mutation: N37D
Gene Name(s): folA tmrA b0048 JW0047
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FOL
Query on FOL

A, B FOLIC ACID
C19 H19 N7 O6
OVBPIULPVIDEAO-LBPRGKRZSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

B CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A, B CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Observed: 0.137
  • Space Group: P 61

Unit Cell:

Length (Å) Angle (°)
a = 93.07 α = 90.00
b = 93.07 β = 90.00
c = 73.81 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1994-10-26
  • Released Date: 1995-06-03
  • Deposition author(s): Reyes, V.M., Kraut, J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4