1DY1

MURINE ENDOSTATIN, CRYSTAL FORM III

Structural Biology Knowledgebase: 1DY1 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.270
  • R-Value Work: 0.195

Literature

Macromolecules
Sequence Display for 1DY1

Classification: ANGIOGENESIS INHIBITOR

Total Structure Weight: 20884.30

Macromolecule Entities
Molecule Chains Length Organism Details
COLLAGEN ALPHA1(XVIII) CHAIN A 188 Mus musculus Fragment: ENDOSTATIN DOMAIN
Mutation: L128A, S129P
Gene Name(s): Col18a1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.270
  • R-Value Work: 0.195
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 37.21 α = 90.00
b = 52.23 β = 90.00
c = 96.45 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-01-21
  • Released Date: 2001-01-21
  • Deposition author(s): Hohenester, E., Sasaki, T., Timpl, R.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4