1DXL

Dihydrolipoamide dehydrogenase of glycine decarboxylase from Pisum Sativum


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.15 Å
  • R-Value Free: 0.323
  • R-Value Work: 0.226

Literature

Macromolecules
Sequence Display for 1DXL

Classification: OXIDOREDUCTASE

Total Structure Weight: 202380.16

Macromolecule Entities
Molecule Chains Length Organism Details
DIHYDROLIPOAMIDE DEHYDROGENASE A, B, C, D 470 Pisum sativum EC#: 1.8.1.4 IUBMB
Mutation: N449H
Gene Name(s): LPD
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FAD
Query on FAD

A, B, C, D FLAVIN-ADENINE DINUCLEOTIDE
C27 H33 N9 O15 P2
VWWQXMAJTJZDQX-UYBVJOGSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.15 Å
  • R-Value Free: 0.323
  • R-Value Work: 0.226
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 100.56 α = 90.00
b = 108.33 β = 90.00
c = 202.19 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-01-10
  • Released Date: 2000-07-20
  • Deposition author(s): Faure, M., Cohen-Addad, C., Bourguignon, J., Macherel, D., Neuburger, M., Douce, R.

Revision History

  • 2014-02-19
    Type: Database references, Derived calculations, Non-polymer description, Other, Refinement description, Source and taxonomy, Version format compliance