1DVR

STRUCTURE OF A MUTANT ADENYLATE KINASE LIGATED WITH AN ATP-ANALOGUE SHOWING DOMAIN CLOSURE OVER ATP


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.36 Å
  • R-Value Observed: 0.191

Literature

Macromolecules
Sequence Display for 1DVR

Classification: TRANSFERASE (PHOSPHOTRANSFERASE)

Total Structure Weight: 49099.43

Macromolecule Entities
Molecule Chains Length Organism Details
ADENYLATE KINASE A, B 220 Saccharomyces cerevisiae EC#: 2.7.4.3 IUBMB
Mutation: D89V, R165I
Gene Name(s): ADK1 AKY AKY1 AKY2 YDR226W YD9934.11
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ATF
Query on ATF

A, B PHOSPHODIFLUOROMETHYLPHOSPHONIC ACID-ADENYLATE ESTER
C11 H16 F2 N5 O12 P3
ODWAWOIUPXBZKQ-KQYNXXCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.36 Å
  • R-Value Observed: 0.191
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 47.80 α = 90.00
b = 73.40 β = 90.00
c = 118.80 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1995-12-14
  • Released Date: 1996-04-03
  • Deposition author(s): Schlauderer, G.J., Schulz, G.E.

Revision History

  • 2008-03-24
    Type: Version format compliance
  • 2011-07-13
    Type: Version format compliance