1DSY

C2 DOMAIN FROM PROTEIN KINASE C (ALPHA) COMPLEXED WITH CA2+ AND PHOSPHATIDYLSERINE

Structural Biology Knowledgebase: 1DSY SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.233
  • R-Value Work: 0.195

Literature

Macromolecules
Sequence Display for 1DSY

Classification: TRANSFERASE

Total Structure Weight: 16871.17

Macromolecule Entities
Molecule Chains Length Organism Details
PROTEIN KINASE C, ALPHA TYPE A 139 Rattus norvegicus EC#: 2.7.11.13 IUBMB
Fragment: CALCIUM/PHOSPHOLIPID BINDING DOMAIN
Gene Name(s): Prkca Pkca
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PSF
Query on PSF

A 1,2-DICAPROYL-SN-PHOSPHATIDYL-L-SERINE
PHOSPHATIDYLSERINE (Synonym)
C18 H34 N O10 P
MIQYPPGTNIFAPO-CABCVRRESA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PO4
Query on PO4

A PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.233
  • R-Value Work: 0.195
  • Space Group: P 32 2 1

Unit Cell:

Length (Å) Angle (°)
a = 58.80 α = 90.00
b = 58.80 β = 90.00
c = 91.70 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-01-10
  • Released Date: 2000-01-26
  • Deposition author(s): Verdaguer, N., Corbalan-Garcia, S., Ochoa, W.F., Fita, I., Gomez-Fernandez, J.C.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4