1DSI

Solution structure of a duocarmycin sa-indole-alkylated dna dupleX

Structural Biology Knowledgebase: 1DSI SBKB.org


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 40
  • Conformers Submitted: 20
  • Selection Criteria: Lowest Restraint Violations

Literature

Macromolecules
Sequence Display for 1DSI

Classification: DNA

Total Structure Weight: 7094.90

Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*GP*AP*CP*TP*AP*AP*TP*TP*GP*AP*C)-3') A 11 synthetic MINOR GROOVE BOUND DUOCARMYCIN SA-INDOLE
DNA (5'-D(*GP*TP*CP*AP*AP*TP*TP*AP*GP*TP*C)-3') B 11 synthetic MINOR GROOVE BOUND DUOCARMYCIN SA-INDOLE

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
DSI
Query on DSI

B 4-HYDROXY-6-(1H-INDOLE-2-CARBONYL)-8-METHYL- 3,6,7,8-TETRAHYDRO-3,6-DIAZA-AS-INDACENE- 2-CARBOXYLIC ACID METHYL ESTER
(+)DUOCARMYCIN SA-INDOLE (Synonym)
C22 H19 N3 O4
SVXVQSGKGYZESS-LLVKDONJSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 40
  • Conformers Submitted: 20
  • Selection Criteria: LOWEST RESTRAINT VIOLATIONS

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 1998-07-29
  • Released Date: 1998-08-05
  • Deposition author(s): Schnell, J.R., Ketchem, R.R., Boger, D.L., Chazin, W.J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4