1DS6

CRYSTAL STRUCTURE OF A RAC-RHOGDI COMPLEX

Structural Biology Knowledgebase: 1DS6 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.35 Å
  • R-Value Free: 0.267
  • R-Value Work: 0.234

Literature

Macromolecules
Sequence Display for 1DS6

Classification: SIGNALING PROTEIN

Total Structure Weight: 42428.99

Macromolecule Entities
Molecule Chains Length Organism Details
RAS-RELATED C3 BOTULINUM TOXIN SUBSTRATE 2 A 192 Homo sapiens Gene Name(s): RAC2 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
RHO GDP-DISSOCIATION INHIBITOR 2 B 180 Homo sapiens Mutation: T200G
Gene Name(s): ARHGDIB Gene View GDIA2 GDID4 RAP1GN1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GDP
Query on GDP

A GUANOSINE-5'-DIPHOSPHATE
C10 H15 N5 O11 P2
QGWNDRXFNXRZMB-UUOKFMHZSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.35 Å
  • R-Value Free: 0.267
  • R-Value Work: 0.234
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 53.03 α = 90.00
b = 61.92 β = 90.00
c = 141.07 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-01-07
  • Released Date: 2000-07-12
  • Deposition author(s): Scheffzek, K., Stephan, I., Jensen, O.N., Illenberger, D., Gierschik, P.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4