1DRZ

U1A SPLICEOSOMAL PROTEIN/HEPATITIS DELTA VIRUS GENOMIC RIBOZYME COMPLEX

Structural Biology Knowledgebase: 1DRZ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.284
  • R-Value Work: 0.281

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1DRZ

Classification: RNA BINDING PROTEIN / RNA

Total Structure Weight: 34841.73


Macromolecule Entities
Molecule Chains Length Organism Details
PROTEIN (U1 SMALL RIBONUCLEOPROTEIN A) A 97 Homo sapiens Fragment: RNA BINDING DOMAIN
Mutation: Y31H, Q36R
Details: SELENOMETHIONYL PROTEIN
Gene Name(s): SNRPA Gene View
Macromolecule Entities
Molecule Chains Length Organism Details
RNA (HEPATITIS DELTA VIRUS GENOMIC RIBOZYME) B 72 Hepatitis delta virus RNA IS THE PRODUCT OF SELF-CLEAVAGE. NUCLEOTIDES 146 - 159 INCLUSIVE ARE AN ENGINEERED COGNATE BINDING SITE FOR THE U1A PROTEIN

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

B MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.284
  • R-Value Work: 0.281
  • Space Group: H 3 2

Unit Cell:

Length (Å) Angle (°)
a = 109.35 α = 90.00
b = 109.35 β = 90.00
c = 190.68 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1998-09-01
  • Released Date: 1999-02-16
  • Deposition author(s): Ferre-D'Amare, A.R., Zhou, K., Doudna, J.A.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4