1DIK

PYRUVATE PHOSPHATE DIKINASE

Structural Biology Knowledgebase: 1DIK SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Observed: 0.182

Literature

Macromolecules
Sequence Display for 1DIK

Classification: PHOSPHOTRANSFERASE

Total Structure Weight: 97074.20

Macromolecule Entities
Molecule Chains Length Organism Details
PYRUVATE PHOSPHATE DIKINASE A 874 [clostridium] symbiosum EC#: 2.7.9.1 IUBMB
Mutation: G94A
Details: PH7.0, CRYSTALLIZATION AT 30C, DATA COLLECTION AT ROOM TEMP
Gene Name(s): ppdK
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Observed: 0.182
  • Space Group: P 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 89.80 α = 90.00
b = 58.80 β = 94.80
c = 102.00 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1995-12-06
  • Released Date: 1996-04-03
  • Deposition author(s): Herzberg, O., Chen, C.C.H.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values