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CRYSTAL STRUCTURE OF E.COLI RIBOSOMAL PROTEIN L25 COMPLEXED WITH A 5S RRNA FRAGMENT AT 1.8 A RESOLUTION
DOI:10.2210/pdb1dfu/pdb   NDB ID: PR0018
1DFU
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Ribosome
    Structure Weight: 23197.66
    Molecule: 5S RRNA
    Polymer: 1 Type: rna Length: 19
    Chains: M
    Fragment: LOOP E-HELIX IV FRAGMENT
    Details: A FRAGMENT OF 5S RRNA IN 50S RIBOSOMAL SUBUNIT
    Molecule: 5S RRNA
    Polymer: 2 Type: rna Length: 19
    Chains: N
    Fragment: LOOP E-HELIX IV FRAGMENT
    Details: A FRAGMENT OF 5S RRNA IN 50S RIBOSOMAL SUBUNIT
    Molecule: RIBOSOMAL PROTEIN L25
    Polymer: 3 Type: protein Length: 94
    Chains: P
    Details: PROTEIN FROM THE LARGE RIBOSOMAL SUBUNIT
    Organism: Escherichia coli
    Gene Names: rplY b2185 JW2173
    UniProtKB: Protein Feature View | Search PDB | P68919  
     
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 3
    Scientific Name: Escherichia coli   Taxonomy   Expression System: Escherichia coli  
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    MG
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    MG Mg
    MAGNESIUM ION
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: PR0018
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors
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  •   Deposition Summary Hide
    Authors:   Lu, M.,  Steitz, T.A.

    Deposition:   1999-11-21
    Release:   1999-12-02
    Last Modified (REVDAT):   2009-02-24
     
  •   Revision History    Hide
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    2011-07-13
    Version format compliance
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
    N/A
    Resolution[Å]:   1.80
    R-Value: 0.226 (obs.)
    R-Free: 0.225
    Space Group: C 2 2 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 75.60 α = 90.00 
    b = 76.60 β = 90.00 
    c = 95.10 γ = 90.00