1DD4

Crystal structure of ribosomal protein l12 from thermotoga maritim

Structural Biology Knowledgebase: 1DD4 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.241
  • R-Value Work: 0.229

Literature

Macromolecules
Sequence Display for 1DD4

Classification: RIBOSOME

Total Structure Weight: 39562.39

Macromolecule Entities
Molecule Chains Length Organism Details
50S RIBOSOMAL PROTEIN L7/L12 A, B 128 Thermotoga maritima Gene Name(s): rplL TM_0457
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
50S RIBOSOMAL PROTEIN L7/L12 C, D 40 Thermotoga maritima Gene Name(s): rplL TM_0457

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
TBR
Query on TBR

A HEXATANTALUM DODECABROMIDE
DODECABROMOHEXATANTALUM (Synonym)
Br12 Ta6
YWYIQTPPCOBSGN-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.241
  • R-Value Work: 0.229
  • Space Group: I 21 3

Unit Cell:

Length (Å) Angle (°)
a = 144.74 α = 90.00
b = 144.74 β = 90.00
c = 144.74 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1999-11-08
  • Released Date: 2000-11-13
  • Deposition author(s): Wahl, M.C., Bourenkov, G.P., Bartunik, H.D., Huber, R.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4