1DCI

DIENOYL-COA ISOMERASE

Structural Biology Knowledgebase: 1DCI SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.205
  • R-Value Work: 0.176

Literature

Macromolecules
Sequence Display for 1DCI

Classification: LYASE

Total Structure Weight: 92548.83

Macromolecule Entities
Molecule Chains Length Organism Details
DIENOYL-COA ISOMERASE A, B, C 275 Rattus norvegicus EC#: 5.3.3 IUBMB
Gene Name(s): Ech1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A, B, C SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

A, B, C 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, C MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.205
  • R-Value Work: 0.176
  • Space Group: P 31 2 1

Unit Cell:

Length (Å) Angle (°)
a = 131.54 α = 90.00
b = 131.54 β = 90.00
c = 96.73 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1998-02-13
  • Released Date: 1999-03-30
  • Deposition author(s): Modis, Y., Filppula, S.A., Novikov, D., Norledge, B., Hiltunen, J.K., Wierenga, R.K.

Revision History

  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4