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SOLUTION STRUCTURE OF THE DNA APTAMER 5'-CGACCAACGTGTCGCCTGGTCG-3' COMPLEXED WITH ARGININAMIDE
DOI:10.2210/pdb1db6/pdb   NDB ID: 1DB6
1DB6
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: DNA
    Structure Weight: 6903.60
    Molecule: DNA
    Polymer: 1 Type: dna Length: 22
    Chains: A
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    1OLD  1OlD is a similar DNA aptamer 
    2ARG  2ARG contains a different DNA aptamer complexed with argininamide 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    AAR
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    AAR C6 H16 N5 O
    ARGININEAMIDE
    AAR:1DB6
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: 1DB6
     
 
Data in orange boxes are gathered from external resources (when available).
 
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  •   Deposition Summary Hide
    Authors:   Robertson, S.A.,  Harada, K.,  Frankel, A.D.,  Wemmer, D.E.

    Deposition:   1999-11-02
    Release:   2000-02-03
    Last Modified (REVDAT):   2009-02-24
     
  •   Revision History    Hide
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    2011-07-13
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  •   Experimental Details Hide
    Method:   SOLUTION NMR
    Exp. Data:
    N/A
    NMR Ensemble
    Conformers Calculated:     30
    Conformers Submitted:     10
    Selection Criteria: structures with acceptable covalent geometry,structures with favorable non- bond energy,structures with the least restraint violations,structures with the lowest energy
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    Method: SOLUTION NMR