1D8D

CO-CRYSTAL STRUCTURE OF RAT PROTEIN FARNESYLTRANSFERASE COMPLEXED WITH A K-RAS4B PEPTIDE SUBSTRATE AND FPP ANALOG AT 2.0A RESOLUTION

Structural Biology Knowledgebase: 1D8D SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.200
  • R-Value Work: 0.164

Literature

Macromolecules
Sequence Display for 1D8D

Classification: TRANSFERASE

Total Structure Weight: 94781.10

Macromolecule Entities
Molecule Chains Length Organism Details
farnesyltransferase (alpha subunit) A 377 Rattus norvegicus EC#: 2.5.1.58 IUBMB 2.5.1.59 IUBMB
Fragment: alpha subunit
Gene Name(s): Fnta
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
farnesyltransferase (beta subunit) B 437 Rattus norvegicus EC#: 2.5.1.58 IUBMB
Fragment: beta subunit
Gene Name(s): Fntb
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
K-RAS4B PEPTIDE SUBSTRATE P 11 Homo sapiens Gene Name(s): KRAS Gene View KRAS2 RASK2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FII
Query on FII

B [(3,7,11-TRIMETHYL-DODECA-2,6,10-TRIENYLOXYCARBAMOYL)- METHYL]-PHOSPHONIC ACID
FPP ANALOG (Synonym)
C17 H30 N O5 P
JAOBYUCYSAOLHS-XGGJEREUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ACT
Query on ACT

B, P ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.200
  • R-Value Work: 0.164
  • Space Group: P 61
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 170.92 α = 90.00
b = 170.92 β = 90.00
c = 69.28 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1999-10-22
  • Released Date: 2000-02-09
  • Deposition author(s): Long, S.B., Casey, P.J., Beese, L.S.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4