1D5D

The role of phenylalanine 8 in the stabilization of the s protein-s peptide interaction: packing and cavities


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.25 Å
  • R-Value Free: 0.218
  • R-Value Work: 0.189

Literature

Macromolecules
Sequence Display for 1D5D

Classification: HYDROLASE

Total Structure Weight: 13108.75

Macromolecule Entities
Molecule Chains Length Organism Details
S PEPTIDE A 15 Bos taurus EC#: 3.1.27.5 IUBMB
Fragment: RESIDUES 1-15
Mutation: F8M, M13L
Details: SYNTHETIC
Gene Name(s): RNASE1 Gene View RNS1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
RNASE S B 101 Bos taurus EC#: 3.1.27.5 IUBMB
Fragment: RESIDUES 21-124
Gene Name(s): RNASE1 Gene View RNS1

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
SET
Query on SET
A L-PEPTIDE LINKING C3 H8 N2 O2 SER

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.25 Å
  • R-Value Free: 0.218
  • R-Value Work: 0.189
  • Space Group: P 31 2 1

Unit Cell:

Length (Å) Angle (°)
a = 44.84 α = 90.00
b = 44.84 β = 90.00
c = 98.00 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1999-10-07
  • Released Date: 1999-10-20
  • Deposition author(s): Ratnaparkhi, G.S., Varadarajan, R.

Revision History

  • Version 1_0: 1999-10-20

    Type: Initial release

  • Version 1_1: 2008-04-27

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance

  • Version 1_3: 2017-10-04

    Type: Refinement description