1D5B

UNLIGANDED MATURE OXY-COPE CATALYTIC ANTIBODY

Structural Biology Knowledgebase: 1D5B SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.285
  • R-Value Work: 0.232

Literature

Macromolecules
Sequence Display for 1D5B

Classification: IMMUNE SYSTEM

Total Structure Weight: 94488.19

Macromolecule Entities
Molecule Chains Length Organism Details
chimeric OXY-COPE catalytic ANTIBODY AZ-28 (light chain) A, L 211 Homo sapiens Mus musculus Fragment: chimeric fab fragment
Details: THE PROTEIN WAS PRODUCED AS A CHIMERIC FAB FRAGMENT. THE VARIABLE DOMAINS (CHAINS A,L 1-107, CHAINS B,H 1-113) ARE MURINE. THE CONSTANT DOMAINS (CHAINS A,L 108-211 AND CHAINS B,H 113-214) ARE HUMAN.
Gene Name(s): IGKC
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
chimeric OXY-COPE catalytic ANTIBODY AZ-28 (HEAVY chain) B, H 221 Homo sapiens Mus musculus Details: THE PROTEIN WAS PRODUCED AS A CHIMERIC FAB FRAGMENT. THE VARIABLE DOMAINS (CHAINS A,L 1-107, CHAINS B,H 1-113) ARE MURINE. THE CONSTANT DOMAINS (CHAINS A,L 108-211 AND CHAINS B,H 113-214) ARE HUMAN.
Gene Name(s): IGHG1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CD
Query on CD

A CADMIUM ION
Cd
WLZRMCYVCSSEQC-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.285
  • R-Value Work: 0.232
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 77.42 α = 90.00
b = 80.67 β = 90.00
c = 134.75 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1999-10-06
  • Released Date: 2000-02-09
  • Deposition author(s): Mundorff, E.C., Hanson, M.A., Schultz, P.G., Stevens, R.C.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values