1D4E

CRYSTAL STRUCTURE OF THE FLAVOCYTOCHROME C FUMARATE REDUCTASE OF SHEWANELLA PUTREFACIENS STRAIN MR-1 COMPLEXED WITH FUMARATE

Structural Biology Knowledgebase: 1D4E SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.311
  • R-Value Work: 0.243

Literature

Macromolecules
Sequence Display for 1D4E

Classification: OXIDOREDUCTASE

Total Structure Weight: 63356.01

Macromolecule Entities
Molecule Chains Length Organism Details
FLAVOCYTOCHROME C FUMARATE REDUCTASE A 572 Shewanella oneidensis EC#: 1.3.5.4 IUBMB
Gene Name(s): SO_0970
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FAD
Query on FAD

A FLAVIN-ADENINE DINUCLEOTIDE
C27 H33 N9 O15 P2
VWWQXMAJTJZDQX-UYBVJOGSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
HEM
Query on HEM

A PROTOPORPHYRIN IX CONTAINING FE
HEME (Synonym)
C34 H32 Fe N4 O4
KABFMIBPWCXCRK-RGGAHWMASA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FUM
Query on FUM

A FUMARIC ACID
C4 H4 O4
VZCYOOQTPOCHFL-OWOJBTEDSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.311
  • R-Value Work: 0.243
  • Space Group: P 43 21 2

Unit Cell:

Length (Å) Angle (°)
a = 73.08 α = 90.00
b = 73.08 β = 90.00
c = 216.20 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1999-10-03
  • Released Date: 1999-12-01
  • Deposition author(s): Leys, D., Tsapin, A.S., Meyer, T.E., Cusanovich, M.A., Van Beeumen, J.J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4