1D30

THE STRUCTURE OF DAPI BOUND TO DNA


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Observed: 0.222

Literature

Macromolecules
Sequence Display for 1D30

Classification: DNA

Total Structure Weight: 7604.11

Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3') A, B 12 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
DAP
Query on DAP

A 6-AMIDINE-2-(4-AMIDINO-PHENYL)INDOLE
C16 H15 N5
FWBHETKCLVMNFS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Observed: 0.222
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 25.35 α = 90.00
b = 40.71 β = 90.00
c = 66.53 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1991-01-04
  • Released Date: 1992-04-15
  • Deposition author(s): Larsen, T., Goodsell, D.S., Cascio, D., Grzeskowiak, K., Dickerson, R.E.

Revision History

  • Version 1_0: 1992-04-15

    Type: Initial release

  • Version 1_1: 2008-05-22

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance