1D1I
MUTATED SHIGA-LIKE TOXIN B SUBUNIT (W34A) COMPLEXED WITH RECEPTOR GB3 ANALOGUE
- PDB DOI: https://doi.org/10.2210/pdb1D1I/pdb
- Classification: TOXIN
- Organism(s): Escherichia coli
- Expression System: Escherichia coli
- Mutation(s): Yes 
- Deposited: 1999-09-17 Released: 2000-09-20 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.70 Å
- R-Value Free: 0.211 
- R-Value Work: 0.191 
wwPDB Validation   3D Report Full Report
This is version 2.1 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
SHIGA TOXIN B-CHAIN | 69 | Escherichia coli | Mutation(s): 1  | ||
UniProt | |||||
Find proteins for P69179 (Enterobacteria phage H19B) Explore P69179  Go to UniProtKB:  P69179 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P69179 | ||||
Sequence AnnotationsExpand | |||||
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Oligosaccharides
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.70 Å
- R-Value Free: 0.211 
- R-Value Work: 0.191 
- Space Group: P 1
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 44.232 | α = 106.04 |
b = 44.136 | β = 106.37 |
c = 53.881 | γ = 99.22 |
Software Name | Purpose |
---|---|
DENZO | data reduction |
SCALEPACK | data scaling |
AMoRE | phasing |
X-PLOR | refinement |
Entry History 
Deposition Data
- Released Date: 2000-09-20  Deposition Author(s): Ling, H., Boodhoo, A., Brunton, J.L., Read, R.J.
Revision History (Full details and data files)
- Version 1.0: 2000-09-20
Type: Initial release - Version 1.1: 2008-04-27
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Version format compliance - Version 1.3: 2018-04-04
Changes: Data collection - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Atomic model, Data collection, Derived calculations, Structure summary - Version 2.1: 2021-11-03
Changes: Database references, Structure summary