1D15

TERNARY INTERACTIONS OF SPERMINE WITH DNA: 4'-EPIADRIAMYCIN AND OTHER DNA: ANTHRACYCLINE COMPLEXES

Structural Biology Knowledgebase: 1D15 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Observed: 0.196

Literature

Macromolecules
Sequence Display for 1D15

Classification: DNA

Total Structure Weight: 2556.11

Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*CP*GP*AP*TP*CP*G)-3') A 6 synthetic

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
DM6
Query on DM6

A 4'-EPIDOXORUBICIN
4'-EPIADRIAMYCIN (Synonym)
C27 H30 N O11
AOJJSUZBOXZQNB-VTZDEGQISA-O
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SPM
Query on SPM

A SPERMINE
C10 H26 N4
PFNFFQXMRSDOHW-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Observed: 0.196
  • Space Group: P 41 21 2

Unit Cell:

Length (Å) Angle (°)
a = 28.04 α = 90.00
b = 28.04 β = 90.00
c = 53.15 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 1990-07-03
  • Released Date: 1991-07-15
  • Deposition author(s): Williams, L.D., Frederick, C.A., Ughetto, G., Rich, A.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4