1D0M

THE ESCHERICHIA COLI LYTIC TRANSGLYCOSYLASE SLT35 IN COMPLEX WITH BULGECIN A AND (GLCNAC)2

Structural Biology Knowledgebase: 1D0M SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.47 Å
  • R-Value Free: 0.241
  • R-Value Work: 0.174

Literature

Macromolecules
Sequence Display for 1D0M

Classification: TRANSFERASE

Total Structure Weight: 37097.02

Macromolecule Entities
Molecule Chains Length Organism Details
35KD SOLUBLE LYTIC TRANSGLYCOSYLASE A 322 Escherichia coli EC#: 4.2.2.n1 IUBMB
Mutation: L40M, L41V
Gene Name(s): mltB b2701 JW2671
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
BLG
Query on BLG

A 4-O-(4-O-SULFONYL-N-ACETYLGLUCOSAMININYL)- 5-METHYLHYDROXY-L-PROLINE-TAURINE
BULGECIN A (Synonym)
C16 H30 N3 O14 S2
RPNZWZDLNYCCIG-HMMVDTEZSA-O
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NAG
Query on NAG

A N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NDG
Query on NDG

A 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
C8 H15 N O6
OVRNDRQMDRJTHS-PVFLNQBWSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.47 Å
  • R-Value Free: 0.241
  • R-Value Work: 0.174
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 58.63 α = 90.00
b = 67.75 β = 90.00
c = 97.76 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1999-09-12
  • Released Date: 2000-03-06
  • Deposition author(s): van Asselt, E.J., Kalk, K.H., Dijkstra, B.W.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update