1CXU

1.42A RESOLUTION ASV INTEGRASE CORE DOMAIN FROM CITRATE

Structural Biology Knowledgebase: 1CXU SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.42 Å
  • R-Value Free: 0.221
  • R-Value Work: 0.187

Literature

Macromolecules
Sequence Display for 1CXU

Classification: TRANSFERASE

Total Structure Weight: 18139.81

Macromolecule Entities
Molecule Chains Length Organism Details
PROTEIN (AVIAN SARCOMA VIRUS INTEGRASE) A 162 Avian sarcoma virus Fragment: CATALYTIC CORE DOMAIN
Mutation: P52G, V101A, R166K
Gene Name(s): gag-pro-pol
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CIT
Query on CIT

A CITRIC ACID
C6 H8 O7
KRKNYBCHXYNGOX-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.42 Å
  • R-Value Free: 0.221
  • R-Value Work: 0.187
  • Space Group: P 43 21 2

Unit Cell:

Length (Å) Angle (°)
a = 66.18 α = 90.00
b = 66.18 β = 90.00
c = 78.73 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1999-08-30
  • Released Date: 1999-09-08
  • Deposition author(s): Lubkowski, J., Dauter, Z., Yang, F., Alexandratos, J., Wlodawer, A.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update