1CVY

CRYSTAL STRUCTURE OF POLYAMIDE DIMER (IMPYPYPYBETADP)2 BOUND TO CCAGATCTGG

Structural Biology Knowledgebase: 1CVY SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.15 Å
  • R-Value Free: 0.229
  • R-Value Work: 0.229

Literature

Macromolecules
Sequence Display for 1CVY

Classification: DNA

Total Structure Weight: 7387.55

Macromolecule Entities
Molecule Chains Length Organism Details
5'-D(*CP*CP*AP*GP*AP*TP*CP*TP*GP*G)-3' A, B 10 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
IPY
Query on IPY

A, B IMIDAZOLE-PYRROLE POLYAMIDE
IMIDAZOLE-PYRROLE-PYRROLE-PYRROLE-BETA ALANINE- DIMETHYLAMINO PROPYLAMIDE (Synonym)
C31 H42 N11 O5
NCFLEKZHRQALKT-UHFFFAOYSA-O
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
IPY N/A in BindingDB
N/A in BindingMoad
Kd: 380 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.15 Å
  • R-Value Free: 0.229
  • R-Value Work: 0.229
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 34.49 α = 90.00
b = 38.59 β = 90.00
c = 47.11 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 1999-08-24
  • Released Date: 2000-01-15
  • Deposition author(s): Kielkopf, C. L., Bremer, R. E., White, S., Baird, E. E., Dervan, P. B., Rees, D. C.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4