1CLY

IGG FAB (HUMAN IGG1, KAPPA) CHIMERIC FRAGMENT (CBR96) COMPLEXED WITH LEWIS Y NONOATE METHYL ESTER


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.298
  • R-Value Work: 0.238

Literature

Macromolecules
Sequence Display for 1CLY

Classification: IMMUNOGLOBULIN

Total Structure Weight: 48535.57

Macromolecule Entities
Molecule Chains Length Organism Details
IGG FAB (HUMAN IGG1, KAPPA) L 219 Homo sapiens Fragment: CHIMERIC FRAGMENT (BR96)
Details: COMPLEXED WITH LEWIS Y NONOATE METHYL ESTER
Gene Name(s): IGKC
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
IGG FAB (HUMAN IGG1, KAPPA) H 219 Homo sapiens Fragment: CHIMERIC FRAGMENT (BR96)
Details: COMPLEXED WITH LEWIS Y NONOATE METHYL ESTER

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

H N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GAL
Query on GAL

H BETA-D-GALACTOSE
C6 H12 O6
WQZGKKKJIJFFOK-FPRJBGLDSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NON
Query on NON

H METHYL NONANOATE (ESTER)
C10 H20 O2
IJXHLVMUNBOGRR-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FUC
Query on FUC

H ALPHA-L-FUCOSE
C6 H12 O5
SHZGCJCMOBCMKK-SXUWKVJYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.298
  • R-Value Work: 0.238
  • Space Group: P 43 21 2

Unit Cell:

Length (Å) Angle (°)
a = 81.70 α = 90.00
b = 81.70 β = 90.00
c = 166.30 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1995-03-15
  • Released Date: 1996-08-01
  • Deposition author(s): Sheriff, S., Bajorath, J.

Revision History

  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4