1C8H

CANINE PARVOVIRUS STRAIN D EMPTY CAPSID STRUCTURE AT PH 5.5

Structural Biology Knowledgebase: 1C8H SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.5 Å
  • R-Value Observed: 0.260

Literature

Macromolecules
Sequence Display for 1C8H

Classification: Virus [ VIPERdb ]

Total Structure Weight: 64786.42

Macromolecule Entities
Molecule Chains Length Organism Details
CANINE PARVOVIRUS CAPSID A 584 Carnivore protoparvovirus 1 Mutation: K386Q
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.5 Å
  • R-Value Observed: 0.260
  • Space Group: P 1

Unit Cell:

Length (Å) Angle (°)
a = 254.49 α = 77.48
b = 253.60 β = 74.91
c = 452.04 γ = 69.27

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-05-05
  • Released Date: 2000-08-09
  • Deposition author(s): Rossmann, M.G., Simpson, A.A.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4