1C7O

CRYSTAL STRUCTURE OF CYSTALYSIN FROM TREPONEMA DENTICOLA CONTAINS A PYRIDOXAL 5'-PHOSPHATE-L-AMINOETHOXYVINYLGLYCINE COMPLEX

Structural Biology Knowledgebase: 1C7O SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.260
  • R-Value Work: 0.193

Literature

Macromolecules
Sequence Display for 1C7O

Classification: TRANSFERASE

Total Structure Weight: 373345.59

Macromolecule Entities
Molecule Chains Length Organism Details
CYSTALYSIN A, B, C..., D, E, F, G, HA, B, C, D, E, F, G, H 399 Treponema denticola Mutation: E88Q, E154Q, I267A
Gene Name(s): hly
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PPG
Query on PPG

A, B, C, D, E, F, G, H (2E,3E)-4-(2-aminoethoxy)-2-[({3-hydroxy- 2-methyl-5-[(phosphonooxy)methyl]pyridin- 4-yl}methyl)imino]but-3-enoic acid
C14 H20 N3 O8 P
OBCQKAZQAHYUOZ-CALQLVRRSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.260
  • R-Value Work: 0.193
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 89.37 α = 90.00
b = 107.93 β = 90.17
c = 176.16 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-03-16
  • Released Date: 2000-07-26
  • Deposition author(s): Krupka, H.I., Huber, R., Holt, S.C., Clausen, T.

Revision History

  • 2011-12-28
    Type: Non-polymer description | Details: --
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4