1BY4

STRUCTURE AND MECHANISM OF THE HOMODIMERIC ASSEMBLY OF THE RXR ON DNA


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.284
  • R-Value Work: 0.234

Literature

Macromolecules
Sequence Display for 1BY4

Classification: GENE REGULATION / DNA

Total Structure Weight: 58062.52


Macromolecule Entities
Molecule Chains Length Organism Details
PROTEIN (RETINOIC ACID RECEPTOR RXR-ALPHA) A, B, C, D 82 Homo sapiens Mutation: A1128G
Gene Name(s): RXRA Gene View NR2B1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*C*TP*AP*GP*GP*TP*CP*AP*AP*AP*GP*GP*TP*CP*AP*G)-3') E, G 16 synthetic
DNA (5'-D(*CP*TP*GP*AP*CP*CP*TP*TP*TP*GP*AP*CP*CP*TP*A)-3') F, H 15 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

A, B, C, D ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.284
  • R-Value Work: 0.234
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 70.93 α = 90.00
b = 33.65 β = 89.95
c = 101.40 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1998-10-22
  • Released Date: 2000-01-12
  • Deposition author(s): Zhao, Q., Chasse, S.A., Devarakonda, S., Sierk, M.L., Ahvazi, B., Sigler, P.B., Rastinejad, F.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4