1BNL

ZINC DEPENDENT DIMERS OBSERVED IN CRYSTALS OF HUMAN ENDOSTATIN

Structural Biology Knowledgebase: 1BNL SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.275
  • R-Value Work: 0.240

Literature

Macromolecules
Sequence Display for 1BNL

Classification: EXTRACELLULAR MATRIX

Total Structure Weight: 78610.83

Macromolecule Entities
Molecule Chains Length Organism Details
COLLAGEN XVIII A, B, C, D 178 Homo sapiens Fragment: ENDOSTATIN, 20-KDA COLLAGEN XVIII C-TERMINAL GLOBULAR DOMAIN
Mutation: S17A
Gene Name(s): COL18A1 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

A, B, C, D ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.275
  • R-Value Work: 0.240
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 92.71 α = 90.00
b = 74.27 β = 102.55
c = 137.80 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1998-07-30
  • Released Date: 1998-10-14
  • Deposition author(s): Ding, Y.-H., Javaherian, K., Lo, K.-M., Chopra, R., Boehm, T., Lanciotti, J., Harris, B.A., Li, Y., Shapiro, R., Hohenester, E., Timpl, R., Folkman, J., Wiley, D.C.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4