1BMK

THE COMPLEX STRUCTURE OF THE MAP KINASE P38/SB218655

Structural Biology Knowledgebase: 1BMK SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.245
  • R-Value Work: 0.189

Literature

Macromolecules
Sequence Display for 1BMK

Classification: TRANSFERASE

Total Structure Weight: 43688.11

Macromolecule Entities
Molecule Chains Length Organism Details
PROTEIN (MAP KINASE P38) A 379 Homo sapiens EC#: 2.7.11.24 IUBMB
Mutation: L48H, T263A
Details: SB218655 PYRIDINYLIMIDAZOLE
Gene Name(s): MAPK14 Gene View CSBP CSBP1 CSBP2 CSPB1 MXI2 SAPK2A
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SB5
Query on SB5

A 4-(FLUOROPHENYL)-1-CYCLOPROPYLMETHYL-5-(2- AMINO-4-PYRIMIDINYL)IMIDAZOLE
C17 H16 F N5
DFEYXQGDDCDXJK-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
SB5 IC50: 25 nM (99) BindingDB

N/A in BindingMoad
IC50: 25 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.245
  • R-Value Work: 0.189
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 45.58 α = 90.00
b = 85.22 β = 90.00
c = 123.50 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1998-07-23
  • Released Date: 1999-07-23
  • Deposition author(s): Wang, Z., Canagarajah, B., Boehm, J.C., Kassis, S., Cobb, M.H., Young, P.R., Abdel- Meguid, S., Adams, J.L., Goldsmith, E.J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4