1BD4

UPRT-URACIL COMPLEX


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Work: 0.194

Literature

Macromolecules
Sequence Display for 1BD4

Classification: TRANSFERASE

Total Structure Weight: 111441.75

Macromolecule Entities
Molecule Chains Length Organism Details
URACIL PHOSPHORIBOSYLTRANSFERASE A, B, C, D 243 Toxoplasma gondii EC#: 2.4.2.9 IUBMB
Mutation: E84Q, C128V, D157E
Gene Name(s): uprt
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
URA
Query on URA

A, B, C, D URACIL
C4 H4 N2 O2
ISAKRJDGNUQOIC-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PO4
Query on PO4

A, B, C, D PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Observed:
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 60.39 α = 90.00
b = 141.77 β = 114.82
c = 71.46 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1998-05-12
  • Released Date: 1999-05-18
  • Deposition author(s): Schumacher, M.A., Carter, D., Scott, D., Roos, D., Ullman, B., Brennan, R.G.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4