1BBU

LYSYL-TRNA SYNTHETASE (LYSS) COMPLEXED WITH LYSINE

Structural Biology Knowledgebase: 1BBU SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.297
  • R-Value Work: 0.228

Literature

Macromolecules
Sequence Display for 1BBU

Classification: LIGASE

Total Structure Weight: 57693.93

Macromolecule Entities
Molecule Chains Length Organism Details
PROTEIN (LYSYL-TRNA SYNTHETASE) A 504 Escherichia coli EC#: 6.1.1.6 IUBMB
Gene Name(s): lysS asuD herC b2890 JW2858
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
LYS
Query on LYS

A LYSINE
C6 H15 N2 O2
KDXKERNSBIXSRK-YFKPBYRVSA-O
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.297
  • R-Value Work: 0.228
  • Space Group: P 61 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 181.82 α = 90.00
b = 181.82 β = 90.00
c = 93.07 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1998-04-24
  • Released Date: 2000-11-10
  • Deposition author(s): Onesti, S., Desogus, G., Brevet, A., Chen, J., Plateau, P., Blanquet, S., Brick, P.

Revision History

  • 2011-07-13
    Type: Source and taxonomy | Details: Removed strain from scientific name
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values