1B25

FORMALDEHYDE FERREDOXIN OXIDOREDUCTASE FROM PYROCOCCUS FURIOSUS

Structural Biology Knowledgebase: 1B25 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.220
  • R-Value Work: 0.174

Literature

Macromolecules
Sequence Display for 1B25

Classification: OXIDOREDUCTASE

Total Structure Weight: 280947.22

Macromolecule Entities
Molecule Chains Length Organism Details
PROTEIN (FORMALDEHYDE FERREDOXIN OXIDOREDUCTASE) A, B, C, D 619 Pyrococcus furiosus Fragment: DOMAIN 1: 1-208, DOMAIN 2: 209-406, DOMAIN 3: 407-619
Gene Name(s): PF1203
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PTT
Query on PTT

A, B, C, D TUNGSTOPTERIN
C21 H25 Mg N10 O13 P2 S4 W
OMJGSXGVFAOTGU-BYZPVVMBSA-G
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SF4
Query on SF4

A, B, C, D IRON/SULFUR CLUSTER
Fe4 S4
LJBDFODJNLIPKO-VKOJMFJBAC
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.220
  • R-Value Work: 0.174
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 100.34 α = 90.00
b = 170.85 β = 90.00
c = 180.64 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1998-12-04
  • Released Date: 1999-03-24
  • Deposition author(s): Hu, Y.L., Faham, S., Roy, R., Adams, M.W.W., Rees, D.C.

Revision History

  • 2011-12-07
    Type: Citation | Details: Citation update
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4