1AVF

ACTIVATION INTERMEDIATE 2 OF HUMAN GASTRICSIN FROM HUMAN STOMACH

Structural Biology Knowledgebase: 1AVF SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.36 Å
  • R-Value Free: 0.282
  • R-Value Work: 0.227

Literature

Macromolecules
Sequence Display for 1AVF

Classification: ASPARTYL PROTEASE

Total Structure Weight: 76920.89

Macromolecule Entities
Molecule Chains Length Organism Details
GASTRICSIN P, Q 26 Homo sapiens EC#: 3.4.23.3 IUBMB
Details: ASPARTIC PROTEINASE ACTIVATION INTERMEDIATE
Gene Name(s): PGC Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
GASTRICSIN A, J 329 Homo sapiens EC#: 3.4.23.3 IUBMB
Details: ASPARTIC PROTEINASE ACTIVATION INTERMEDIATE
Gene Name(s): PGC Gene View

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NA
Query on NA

A SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.36 Å
  • R-Value Free: 0.282
  • R-Value Work: 0.227
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 156.26 α = 90.00
b = 50.41 β = 117.62
c = 125.18 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1997-09-16
  • Released Date: 1998-02-25
  • Deposition author(s): Khan, A.R., Cherney, M.M., Tarasova, N.I., James, M.N.G.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4