NMR Ensemble

1AMD

NMR STUDY OF DNA (5'-D(*TP*GP*TP*AP*CP*A)-3') SELF-COMPLEMENTARY DUPLEX COMPLEXED WITH A BIS-DAUNORUBICIN WP-652, MINIMIZED AVERAGE STRUCTURE

Structural Biology Knowledgebase: 1AMD SBKB.org


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 1
  • Conformers Submitted: 1
  • Selection Criteria: Minimized Average

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1AMD

Classification: DNA

Total Structure Weight: 4775.68

Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*TP*GP*TP*AP*CP*A)-3') A, B 6 synthetic WP652 IS AN INTERCALATOR

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
BNR
Query on BNR

B BIS-DAUNORUBICIN
WP652 (Synonym)
C62 H66 N2 O20
CRXRBKHVHUKITD-MJSRGEEMSA-P
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 1
  • Conformers Submitted: 1
  • Selection Criteria: MINIMIZED AVERAGE

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 1997-06-12
  • Released Date: 1997-09-17
  • Deposition author(s): Robinson, H., Wang, A.H.-J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4