1AGQ

GLIAL CELL-DERIVED NEUROTROPHIC FACTOR FROM RAT

PDB DOI: https://doi.org/10.2210/pdb1AGQ/pdb

Classification: GROWTH FACTOR
Organism(s): Rattus norvegicus
Expression System: Escherichia coli
Mutation(s): No

Deposited: 1997-03-25 Released: 1997-06-05
Deposition Author(s): Eigenbrot, C., Gerber, N.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.90 Å
R-Value Free: 0.235
R-Value Work: 0.203
R-Value Observed: 0.203

wwPDB Validation 3D Report Full Report

This is version 1.2 of the entry. See complete history.

Literature

X-ray structure of glial cell-derived neurotrophic factor at 1.9 A resolution and implications for receptor binding.

Eigenbrot, C., Gerber, N.

(1997) Nat Struct Biol 4: 435-438

PubMed: 9187648 Search on PubMed
DOI: https://doi.org/10.1038/nsb0697-435
Primary Citation of Related Structures:
1AGQ

PubMed Abstract:
The crystal structure of glial cell-derived neurotrophic factor (GDNF) reveals two independent copies of the dimer that differ significantly through a hinge bending at the central, disulphide-rich region. GDNF is compared with other members of the TGF-beta family, and potential receptor binding surfaces are identified.

Macromolecule Content

Total Structure Weight: 60.36 kDa
Atom Count: 3,236
Modelled Residue Count: 373
Deposited Residue Count: 540
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
GLIAL CELL-DERIVED NEUROTROPHIC FACTOR	A, B, C, D	135	Rattus norvegicus	Mutation(s): 0
UniProt
Find proteins for Q07731 (Rattus norvegicus) Explore Q07731 Go to UniProtKB: Q07731
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q07731
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.90 Å
R-Value Free: 0.235
R-Value Work: 0.203
R-Value Observed: 0.203
Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 67.85	α = 90
b = 67.55	β = 115.94
c = 71.4	γ = 90

Software Package:

Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
XSIGHT	model building
X-PLOR	refinement
XSIGHT	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 1997-06-05

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 1997-06-05
Type: Initial release
Version 1.1: 2008-03-24
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.