16PK

PHOSPHOGLYCERATE KINASE FROM TRYPANOSOMA BRUCEI BISUBSTRATE ANALOG

Structural Biology Knowledgebase: 16PK SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.235
  • R-Value Work: 0.188

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 16PK

Classification: KINASE

Total Structure Weight: 45571.98

Macromolecule Entities
Molecule Chains Length Organism Details
3-PHOSPHOGLYCERATE KINASE A 415 Trypanosoma brucei EC#: 2.7.2.3 IUBMB
Mutation: A98R, E418D
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
BIS
Query on BIS

A 1,1,5,5-TETRAFLUOROPHOSPHOPENTYLPHOSPHONIC ACID ADENYLATE ESTER
C15 H22 F4 N5 O12 P3
VWQBAZQMKBHYJA-QYVSTXNMSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EPE
Query on EPE

A 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
HEPES (Synonym)
C8 H18 N2 O4 S
JKMHFZQWWAIEOD-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
BIS N/A in BindingDB
N/A in BindingMoad
Ki: 6000 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.235
  • R-Value Work: 0.188
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 72.71 α = 90.00
b = 79.76 β = 90.00
c = 81.32 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1998-05-18
  • Released Date: 1998-11-25
  • Deposition author(s): Bernstein, B.E., Bressi, J., Blackburn, M., Gelb, M., Hol, W.G.J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4