108M

SPERM WHALE MYOGLOBIN V68F N-BUTYL ISOCYANIDE AT PH 7.0

Structural Biology Knowledgebase: 108M SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.67 Å
  • R-Value Free: 0.226
  • R-Value Work: 0.124

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 108M

Classification: OXYGEN TRANSPORT

Total Structure Weight: 18209.06

Macromolecule Entities
Molecule Chains Length Organism Details
MYOGLOBIN A 154 Physeter catodon Mutation: V68F, D122N
Gene Name(s): MB Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HEM
Query on HEM

A PROTOPORPHYRIN IX CONTAINING FE
HEME (Synonym)
C34 H32 Fe N4 O4
KABFMIBPWCXCRK-RGGAHWMASA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NBN
Query on NBN

A N-BUTYL ISOCYANIDE
C5 H9 N
FSBLVBBRXSCOKU-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.67 Å
  • R-Value Free: 0.226
  • R-Value Work: 0.124
  • Space Group: P 6
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 91.62 α = 90.00
b = 91.62 β = 90.00
c = 45.98 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1997-12-23
  • Released Date: 1998-05-20
  • Deposition author(s): Smith, R.D., Olson, J.S., Phillips Jr., G.N.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4