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REFINEMENT OF NETROPSIN BOUND TO DNA: BIAS AND FEEDBACK IN ELECTRON DENSITY MAP INTERPRETATION
 
 
DOI:10.2210/pdb101d/pdb   NDB ID: GDLB31
101D
 
Primary Citation
spinning wheel
 
 
  •  
    Move Section Molecular Description Hide
    Classification: DNA
    Structure Weight: 7939.41
     
    Molecule:DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*(CBR)P*GP*CP*G)-3')
    Polymer:1Type:polydeoxyribonucleotideLength:12
    Chains:A, B
     
     
  •  
    Move Section Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct Go to NCBI Taxonomy entry  
     
     
  •  
    Move Section Ligand Chemical Component Hide
    Identifier Name Formula Interaction View Links
    MG     MAGNESIUM ION Mg 3DLigand Explorer Link out to Ligand Expos:MG Link out to SuperLigands:MG Link out to SuperHapten:MG
    NT     NETROPSIN C18 H26 N10 O3 3DLigand Explorer Link out to Ligand Expos:NT Link out to SuperLigands:NT Link out to SuperHapten:NT
     
     
  •  
    Move Section Modified Residues Hide
    Identifier Name Formula Interaction View Links
    CBR 5-BROMO-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE (parent: DC)(type: dnaLinking) C9 H13 Br N3 O7 P Link out to Ligand Expos:CBR Link out to SuperLigands:CBR Link out to SuperHapten:CBR 2D
     
     
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  •  
    Move Section Deposition Summary Hide
    Authors:   Goodsell, D.S.,   Kopka, M.L.,   Dickerson, R.E.

    Deposition:   1994-12-14
    Release:   1995-02-27
    Last Modified (REVDAT):   2009-02-24
     
     
  •  
    Move Section Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Experimental Data:   N/A
    View a histogram of Resolution Resolution[Å]: 2.25
    R-Value: 0.163 (obs.)
    R-Free: 0.252
    Space Group: P 21 21 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 24.27 α = 90.00 
    b = 39.62 β = 90.00 
    c = 63.57 γ = 90.00