6YVH

CWC22-CWC27-EIF4A3 Complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.19 Å
  • R-Value Free: 0.263 
  • R-Value Work: 0.232 
  • R-Value Observed: 0.233 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Structural and functional insights into CWC27/CWC22 heterodimer linking the exon junction complex to spliceosomes.

Busetto, V.Barbosa, I.Basquin, J.Marquenet, E.Hocq, R.Hennion, M.Paternina, J.A.Namane, A.Conti, E.Bensaude, O.Le Hir, H.

(2020) Nucleic Acids Res 48: 5670-5683

  • DOI: https://doi.org/10.1093/nar/gkaa267
  • Primary Citation of Related Structures:  
    6YVH

  • PubMed Abstract: 

    Human CWC27 is an uncharacterized splicing factor and mutations in its gene are linked to retinal degeneration and other developmental defects. We identify the splicing factor CWC22 as the major CWC27 partner. Both CWC27 and CWC22 are present in published Bact spliceosome structures, but no interacting domains are visible. Here, the structure of a CWC27/CWC22 heterodimer bound to the exon junction complex (EJC) core component eIF4A3 is solved at 3Å-resolution. According to spliceosomal structures, the EJC is recruited in the C complex, once CWC27 has left. Our 3D structure of the eIF4A3/CWC22/CWC27 complex is compatible with the Bact spliceosome structure but not with that of the C complex, where a CWC27 loop would clash with the EJC core subunit Y14. A CWC27/CWC22 building block might thus form an intermediate landing platform for eIF4A3 onto the Bact complex prior to its conversion into C complex. Knock-down of either CWC27 or CWC22 in immortalized retinal pigment epithelial cells affects numerous common genes, indicating that these proteins cooperate, targeting the same pathways. As the most up-regulated genes encode factors involved in inflammation, our findings suggest a possible link to the retinal degeneration associated with CWC27 deficiencies.


  • Organizational Affiliation

    Institut de Biologie de l'Ecole Normale Supérieure (IBENS), Ecole Normale Supérieure, CNRS, INSERM, PSL Research University, 46 rue d'Ulm, 75005 Paris, France.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Pre-mRNA-splicing factor CWC22 homologA,
B,
D,
E [auth F]
291Homo sapiensMutation(s): 0 
Gene Names: CWC22KIAA1604NCM
UniProt & NIH Common Fund Data Resources
Find proteins for Q9HCG8 (Homo sapiens)
Explore Q9HCG8 
Go to UniProtKB:  Q9HCG8
PHAROS:  Q9HCG8
GTEx:  ENSG00000163510 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9HCG8
Sequence Annotations
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Spliceosome-associated protein CWC27 homologC,
J [auth I],
K [auth E],
L [auth G]
57Homo sapiensMutation(s): 0 
Gene Names: CWC27SDCCAG10UNQ438/PRO871
UniProt & NIH Common Fund Data Resources
Find proteins for Q6UX04 (Homo sapiens)
Explore Q6UX04 
Go to UniProtKB:  Q6UX04
PHAROS:  Q6UX04
GTEx:  ENSG00000153015 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ6UX04
Sequence Annotations
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  • Reference Sequence
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Eukaryotic initiation factor 4A-IIIF [auth H],
G [auth J],
H [auth K],
I [auth L]
166Homo sapiensMutation(s): 0 
Gene Names: EIF4A3DDX48KIAA0111
EC: 3.6.4.13
UniProt & NIH Common Fund Data Resources
Find proteins for P38919 (Homo sapiens)
Explore P38919 
Go to UniProtKB:  P38919
PHAROS:  P38919
GTEx:  ENSG00000141543 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP38919
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.19 Å
  • R-Value Free: 0.263 
  • R-Value Work: 0.232 
  • R-Value Observed: 0.233 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 151.255α = 90
b = 163.627β = 90
c = 181.131γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
Aimlessdata reduction
XDSdata processing
PHASERphasing
Aimlessdata scaling

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
French National Research AgencyFranceANR-13-BSV8-0023

Revision History  (Full details and data files)

  • Version 1.0: 2020-05-13
    Type: Initial release
  • Version 1.1: 2020-06-10
    Changes: Database references
  • Version 1.2: 2024-01-24
    Changes: Data collection, Database references, Refinement description