6VRE

Structure of ASK1 bound to BIO-1772961


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.29 Å
  • R-Value Free: 0.240 
  • R-Value Work: 0.190 

wwPDB Validation   3D Report Full Report

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This is version 1.1 of the entry. See complete history


Literature

Discovery of CNS-Penetrant Apoptosis Signal-Regulating Kinase 1 (ASK1) Inhibitors.

Xin, Z.Himmelbauer, M.K.Jones, J.H.Enyedy, I.Gilfillan, R.Hesson, T.King, K.Marcotte, D.J.Murugan, P.Santoro, J.C.Gonzalez-Lopez de Turiso, F.

(2020) ACS Med Chem Lett 11: 485-490

  • DOI: https://doi.org/10.1021/acsmedchemlett.9b00611
  • Primary Citation of Related Structures:  
    6VRE

  • PubMed Abstract: 

    Apoptosis signal-regulating kinase 1 (ASK1) is a key mediator in the apoptotic and inflammatory cellular stress response. To investigate the therapeutic value of modulating this pathway in neurological disease, we have completed medicinal chemistry studies to identify novel CNS-penetrant ASK1 inhibitors starting from peripherally restricted compounds reported in the literature. This effort led to the discovery of 21 , a novel ASK1 inhibitor with good potency (cell IC 50 = 138 nM), low clearance (rat Cl/Cl u = 0.36/6.7 L h -1 kg -1 ) and good CNS penetration (rat K p,uu = 0.38).


  • Organizational Affiliation

    Medicinal Chemistry, Bioassays, Drug Metabolism and Pharmacokinetics, and Physical Biochemistry and Molecular Design, Biotherapeutic and Medicinal Sciences, Biogen, 225 Binney Street, Cambridge, Massachusetts 02142, United States.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Mitogen-activated protein kinase kinase kinase 5
A, B
291Homo sapiensMutation(s): 0 
Gene Names: MAP3K5ASK1MAPKKK5MEKK5
EC: 2.7.11.25
UniProt & NIH Common Fund Data Resources
Find proteins for Q99683 (Homo sapiens)
Explore Q99683 
Go to UniProtKB:  Q99683
PHAROS:  Q99683
GTEx:  ENSG00000197442 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ99683
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
RFG (Subject of Investigation/LOI)
Query on RFG

Download Ideal Coordinates CCD File 
D [auth A],
E [auth B]
3-methoxy-N-{6-[4-(propan-2-yl)-4H-1,2,4-triazol-3-yl]pyridin-2-yl}-1-(pyrazin-2-yl)-1H-pyrazole-4-carboxamide
C19 H19 N9 O2
FTPVMITWJIXRGQ-UHFFFAOYSA-N
DMS
Query on DMS

Download Ideal Coordinates CCD File 
C [auth A]DIMETHYL SULFOXIDE
C2 H6 O S
IAZDPXIOMUYVGZ-UHFFFAOYSA-N
Binding Affinity Annotations 
IDSourceBinding Affinity
RFG Binding MOAD:  6VRE IC50: 21 (nM) from 1 assay(s)
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.29 Å
  • R-Value Free: 0.240 
  • R-Value Work: 0.190 
  • Space Group: P 65 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 77.05α = 90
b = 77.05β = 90
c = 419.38γ = 120
Software Package:
Software NamePurpose
PHENIXrefinement
PDB_EXTRACTdata extraction
XDSdata reduction
Aimlessdata scaling
PHENIXphasing

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2020-05-06
    Type: Initial release
  • Version 1.1: 2023-10-11
    Changes: Data collection, Database references, Refinement description