6R2F

Crystal structure of TEX12 F102A F109E V116A in an alternative conformation

PDB DOI: https://doi.org/10.2210/pdb6R2F/pdb

Classification: STRUCTURAL PROTEIN
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2019-03-17 Released: 2020-04-01
Deposition Author(s): Dunce, J.M., Davies, O.R.
Funding Organization(s): Wellcome Trust, Royal Society

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.29 Å
R-Value Free: 0.262
R-Value Work: 0.238
R-Value Observed: 0.239

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Meiotic synaptonemal complex extension through fibrous assembly of SYCE2-TEX12

Dunce, J.M., Salmon, L.J., Davies, O.R.

To be published.

Macromolecule Content

Total Structure Weight: 37.3 kDa
Atom Count: 2,226
Modelled Residue Count: 245
Deposited Residue Count: 316
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Testis-expressed protein 12	A, B, C, D	79	Homo sapiens	Mutation(s): 3 Gene Names: TEX12
UniProt & NIH Common Fund Data Resources
Find proteins for Q9BXU0 (Homo sapiens) Explore Q9BXU0 Go to UniProtKB: Q9BXU0
PHAROS: Q9BXU0 GTEx: ENSG00000150783
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q9BXU0
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
MPD Query on MPD Download Ideal Coordinates CCD File SDF format, chain E [auth A] SDF format, chain G [auth B] SDF format, chain H [auth B] SDF format, chain I [auth C] SDF format, chain J [auth C] SDF format, chain K [auth C] SDF format, chain L [auth C] SDF format, chain M [auth D] SDF format, chain N [auth D] SDF format, chain O [auth D] SDF format, chain P [auth D] MOL2 format, chain E [auth A] MOL2 format, chain G [auth B] MOL2 format, chain H [auth B] MOL2 format, chain I [auth C] MOL2 format, chain J [auth C] MOL2 format, chain K [auth C] MOL2 format, chain L [auth C] MOL2 format, chain M [auth D] MOL2 format, chain N [auth D] MOL2 format, chain O [auth D] MOL2 format, chain P [auth D]	E [auth A] G [auth B] H [auth B] I [auth C] J [auth C] E [auth A], G [auth B], H [auth B], I [auth C], J [auth C], K [auth C], L [auth C], M [auth D], N [auth D], O [auth D], P [auth D]	(4S)-2-METHYL-2,4-PENTANEDIOL C₆ H₁₄ O₂ SVTBMSDMJJWYQN-YFKPBYRVSA-N		Interactions Focus chain E [auth A] Focus chain G [auth B] Focus chain H [auth B] Focus chain I [auth C] Focus chain J [auth C] Focus chain K [auth C] Focus chain L [auth C] Focus chain M [auth D] Focus chain N [auth D] Focus chain O [auth D] Focus chain P [auth D] Interactions & Density Focus chain E [auth A] Focus chain G [auth B] Focus chain H [auth B] Focus chain I [auth C] Focus chain J [auth C] Focus chain K [auth C] Focus chain L [auth C] Focus chain M [auth D] Focus chain N [auth D] Focus chain O [auth D] Focus chain P [auth D]
CL Query on CL Download Ideal Coordinates CCD File SDF format, chain F [auth A] SDF format, chain Q [auth D] MOL2 format, chain F [auth A] MOL2 format, chain Q [auth D]	F [auth A], Q [auth D]	CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M		Interactions Focus chain F [auth A] Focus chain Q [auth D] Interactions & Density Focus chain F [auth A] Focus chain Q [auth D]