Download MendeleyCrystal structure of human PACRG in complex with MEIG1
Khan, N., Pelletier, D., Veyron, S., Croteau, N., Ichikawa, M., Black, C., Khalifa, A.A.Z., Chaaban, S., Kurinov, I., Brouhard, G., Bui, K.H., Trempe, J.F.(2019) Biorxiv
6NDU
Structure of human PACRG-MEIG1 complex
- PDB DOI: https://doi.org/10.2210/pdb6NDU/pdb
- Classification: STRUCTURAL PROTEIN
- Organism(s): Homo sapiens
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2018-12-14 Released: 2019-10-23
- Funding Organization(s): Canadian Institutes of Health Research (CIHR)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.10 Å
- R-Value Free: 0.227
- R-Value Work: 0.190
- R-Value Observed: 0.192
wwPDB Validation 3D Report Full Report
Currently 6NDU does not have a validation slider image.
This is version 1.2 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Parkin coregulated gene protein | 193 | Homo sapiens | Mutation(s): 0 Gene Names: PACRG, GLUP |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q96M98 (Homo sapiens) Explore Q96M98 Go to UniProtKB: Q96M98 | |||||
PHAROS: Q96M98 GTEx: ENSG00000112530 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q96M98 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Meiosis expressed gene 1 protein homolog | 93 | Homo sapiens | Mutation(s): 0 Gene Names: MEIG1 |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q5JSS6 (Homo sapiens) Explore Q5JSS6 Go to UniProtKB: Q5JSS6 | |||||
PHAROS: Q5JSS6 GTEx: ENSG00000197889 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q5JSS6 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PO4 Query on PO4 | D [auth B] | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K |  | ||
| CL Query on CL | C [auth A] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.10 Å
- R-Value Free: 0.227
- R-Value Work: 0.190
- R-Value Observed: 0.192
- Space Group: P 41 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 67.297 | α = 90 |
| b = 67.297 | β = 90 |
| c = 158.255 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| XDS | data reduction |
| Aimless | data scaling |
| PHASER | phasing |
| PDB_EXTRACT | data extraction |
Structure Validation
Currently 6NDU does not have a validation slider image.
Entry History & Funding Information
Deposition Data
- Released Date: 2019-10-23 Deposition Author(s): Khan, N., Croteau, N., Pelletier, D., Veyron, S., Trempe, J.F.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Canadian Institutes of Health Research (CIHR) | Canada | 950-229792 X-239354 |
Revision History (Full details and data files)
- Version 1.0: 2019-10-23
Type: Initial release - Version 1.1: 2020-01-08
Changes: Author supporting evidence - Version 1.2: 2023-10-11
Changes: Data collection, Database references, Refinement description
