6K3F

Crystal Structure of beta-Arrestin 2 in Complex with CXCR7 Phosphopeptide


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.30 Å
  • R-Value Free: 0.246 
  • R-Value Work: 0.233 
  • R-Value Observed: 0.236 

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This is version 1.2 of the entry. See complete history


Literature

Crystal Structure of beta-Arrestin 2 in Complex with CXCR7 Phosphopeptide.

Min, K.Yoon, H.J.Park, J.Y.Baidya, M.Dwivedi-Agnihotri, H.Maharana, J.Chaturvedi, M.Chung, K.Y.Shukla, A.K.Lee, H.H.

(2020) Structure 28: 1014-1023.e4

  • DOI: https://doi.org/10.1016/j.str.2020.06.002
  • Primary Citation of Related Structures:  
    6K3F

  • PubMed Abstract: 

    β-Arrestins (βarrs) critically regulate G-protein-coupled receptor (GPCR) signaling and trafficking. βarrs have two isoforms, βarr1 and βarr2. Receptor phosphorylation is a key determinant for the binding of βarrs, and understanding the intricate details of receptor-βarr interaction is the next frontier in GPCR structural biology. The high-resolution structure of active βarr1 in complex with a phosphopeptide derived from GPCR has been revealed, but that of βarr2 remains elusive. Here, we present a 2.3-Å crystal structure of βarr2 in complex with a phosphopeptide (C7pp) derived from the carboxyl terminus of CXCR7. The structural analysis of C7pp-bound βarr2 reveals key differences from the previously determined active conformation of βarr1. One of the key differences is that C7pp-bound βarr2 shows a relatively small inter-domain rotation. Antibody-fragment-based conformational sensor and hydrogen/deuterium exchange experiments further corroborated the structural features of βarr2 and suggested that βarr2 adopts a range of inter-domain rotations.


  • Organizational Affiliation

    Department of Chemistry, College of Natural Sciences, Seoul National University, Seoul 08826, Republic of Korea.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Beta-arrestin-2377Rattus norvegicusMutation(s): 0 
Gene Names: Arrb2
UniProt
Find proteins for P29067 (Rattus norvegicus)
Explore P29067 
Go to UniProtKB:  P29067
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP29067
Sequence Annotations
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  • Reference Sequence

Find similar proteins by:  Sequence   |   3D Structure  

Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Peptide from Atypical chemokine receptor 315Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P25106 (Homo sapiens)
Explore P25106 
Go to UniProtKB:  P25106
PHAROS:  P25106
GTEx:  ENSG00000144476 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP25106
Sequence Annotations
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  • Reference Sequence
Small Molecules
Modified Residues  2 Unique
IDChains TypeFormula2D DiagramParent
SEP
Query on SEP
B [auth U]
D [auth V]
F [auth W]
H [auth X]
J [auth Y]
B [auth U],
D [auth V],
F [auth W],
H [auth X],
J [auth Y],
L [auth Z]
L-PEPTIDE LINKINGC3 H8 N O6 PSER
TPO
Query on TPO
B [auth U]
D [auth V]
F [auth W]
H [auth X]
J [auth Y]
B [auth U],
D [auth V],
F [auth W],
H [auth X],
J [auth Y],
L [auth Z]
L-PEPTIDE LINKINGC4 H10 N O6 PTHR
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.30 Å
  • R-Value Free: 0.246 
  • R-Value Work: 0.233 
  • R-Value Observed: 0.236 
  • Space Group: C 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 91.17α = 90
b = 127.91β = 90.04
c = 206.04γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
XDSdata scaling
MOLREPphasing

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Research Foundation (NRF, Korea)Korea, Republic Of2015R1A5A1008958
National Research Foundation (NRF, Korea)Korea, Republic Of2018R1A2B2008142
Ministry of Science, ICT and Future Planning (MSIP)Korea, Republic Of2014M1A8A1049296

Revision History  (Full details and data files)

  • Version 1.0: 2020-06-10
    Type: Initial release
  • Version 1.1: 2021-06-23
    Changes: Database references, Structure summary
  • Version 1.2: 2023-11-22
    Changes: Data collection, Database references, Refinement description