6GFJ

Structure of RIP2 CARD domain fused to crystallisable MBP tag

• PDB DOI: https://doi.org/10.2210/pdb6GFJ/pdb

• Classification: TRANSFERASE
• Organism(s): Methanosarcina mazei, Homo sapiens
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2018-04-30 Released: 2019-03-13 
• Deposition Author(s): Pellegrini, E., Cusack, S.

---

Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 3.30 Å
• R-Value Free: 0.266 
• R-Value Work: 0.235 
• R-Value Observed: 0.236 

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Homo 4-mer - A4 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 212.03 kDa 
• Atom Count: 14,252 
• Modelled Residue Count: 1,822 
• Deposited Residue Count: 1,908 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Sugar ABC transporter substrate-binding protein,Receptor-interacting serine/threonine-protein kinase 2	A, B, C, D	477	Methanosarcina mazei, Homo sapiens This entity is chimeric	Mutation(s): 0  Gene Names: malE, DU74_04045, RIPK2, CARDIAK, RICK, RIP2, UNQ277/PRO314/PRO34092 EC: 2.7.11.1 (PDB Primary Data), 2.7.10.2 (PDB Primary Data)
UniProt & NIH Common Fund Data Resources
Find proteins for O43353 (Homo sapiens) Explore O43353  Go to UniProtKB:  O43353
PHAROS:  O43353 GTEx:  ENSG00000104312

Oligosaccharides

Help

Entity ID: 2
Molecule	Chains	Length	2D Diagram	Glycosylation	3D Interactions
alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose	E, F, G, H	2		N/A
Glycosylation Resources
GlyTouCan:  G07411ON GlyCosmos:  G07411ON

Biologically Interesting Molecules (External Reference) 1 Unique

Entity ID: 2
ID	Chains	Name	Type/Class	2D Diagram	3D Interactions
PRD_900001	E, F, G, H	alpha-maltose	Oligosaccharide / Nutrient

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 3.30 Å
• R-Value Free: 0.266 
• R-Value Work: 0.235 
• R-Value Observed: 0.236 
• Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 89.46	α = 90
b = 121.57	β = 109.04
c = 123.16	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
XDS	data reduction
XSCALE	data scaling
PHASER	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2019-03-13 
Deposition Author(s): Pellegrini, E., Cusack, S.

Revision History  

• Version 1.0: 2019-03-13
  Type: Initial release
  
• Version 2.0: 2020-07-29
  Type: Remediation
  Reason: Carbohydrate remediation
  Changes: Advisory, Atomic model, Data collection, Derived calculations, Non-polymer description, Structure summary
• Version 2.1: 2024-01-17
  Changes: Data collection, Database references, Refinement description, Structure summary