5XY3

Large subunit of Trichomonas vaginalis ribosome


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.2 Å
  • Aggregation State: Particle
  • Reconstruction Method: Single Particle

Literature

Macromolecules
Sequence Display for 5XY3

Classification: RIBOSOME

Total Structure Weight: 1713540.13


Macromolecule Entities
Molecule Chains Length Organism Details
Ribosomal protein L8, putative A 251 Trichomonas vaginalis Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Uncharacterized protein B 415 Trichomonas vaginalis Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Ribosomal protein, putative C 370 Trichomonas vaginalis Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Ribosomal protein L5 D 308 Trichomonas vaginalis Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S ribosomal protein L6, putative E 151 Trichomonas vaginalis Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Ribosomal protein L30p/L7e, putative F 239 Trichomonas vaginalis Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Ribosomal protein L7Ae, putative G 244 Trichomonas vaginalis Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Ribosomal protein L6, putative H 197 Trichomonas vaginalis Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Ribosomal protein, putative I 209 Trichomonas vaginalis Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S ribosomal protein L11, putative J 169 Trichomonas vaginalis Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Ribosomal protein L13e, putative L 189 Trichomonas vaginalis Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Ribosomal protein L14, putative M 128 Trichomonas vaginalis Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Ribosomal protein L15 N 204 Trichomonas vaginalis Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Ribosomal protein L13, putative O 200 Trichomonas vaginalis Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Ribosomal protein L22, putative P 164 Trichomonas vaginalis Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S ribosomal protein L18, putative Q 186 Trichomonas vaginalis Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S ribosomal protein L19-3, putative R 178 Trichomonas vaginalis Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S ribosomal protein L18a S 176 Trichomonas vaginalis Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Ribosomal protein L21e, putative T 159 Trichomonas vaginalis Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S ribosomal protein L22-1, putative U 106 Trichomonas vaginalis Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S ribosomal protein L23, putative V 140 Trichomonas vaginalis Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Ribosomal protein L24e, putative W 113 Trichomonas vaginalis Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Ribosomal protein L23, putative X 140 Trichomonas vaginalis Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Ribosomal protein L24, putative Y 138 Trichomonas vaginalis Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Ribosomal protein L27e, putative Z 139 Trichomonas vaginalis Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Uncharacterized protein a 151 Trichomonas vaginalis Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S ribosomal protein L29 b 58 Trichomonas vaginalis Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S ribosomal protein L30, putative c 112 Trichomonas vaginalis Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Ribosomal protein L31e, putative d 110 Trichomonas vaginalis Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Ribosomal protein L32, putative e 132 Trichomonas vaginalis Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Ribosomal protein L35Ae, putative f 102 Trichomonas vaginalis Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Ribosomal protein L34e, putative g 116 Trichomonas vaginalis Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Ribosomal protein L29, putative h 124 Trichomonas vaginalis Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Ribosomal protein L36e, putative i 91 Trichomonas vaginalis Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Ribosomal protein L37 j 81 Trichomonas vaginalis Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Ribosomal protein L38e, putative k 74 Trichomonas vaginalis Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S ribosomal protein L39, putative l 51 Trichomonas vaginalis Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Ubiquitin, putative m 132 Trichomonas vaginalis Fragment: UNP residues 35-166
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S ribosomal protein L44, putative o 104 Trichomonas vaginalis Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Uncharacterized protein p 92 Trichomonas vaginalis Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
25S ribosomal RNA 1 2765 Trichomonas vaginalis
5S ribosomal RNA 3 118 Trichomonas vaginalis
5.8S ribosomal RNA 4 162 Trichomonas vaginalis


Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.2 Å
  • Reconstruction Method: Single Particle

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2017-07-06
  • Released Date: 2017-08-30
  • Deposition author(s): Li, Z., Guo, Q., Zheng, L., Ji, Y., Xie, Y., Lai, D., Lun, Z., Suo, X., Gao, N.

Revision History

  • 2017-09-06
    Type: Structure summary