5TE0

Crystal Structure of Adaptor Protein 2 Associated Kinase (AAK1) in complex with BIBF 1120


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.199
  • R-Value Work: 0.181

Literature

Macromolecules
Sequence Display for 5TE0

Classification: Transferase / Transferase Inhibitor

Total Structure Weight: 40465.33

Macromolecule Entities
Molecule Chains Length Organism Details
AP2-associated protein kinase 1 A 347 Homo sapiens EC#: 2.7.11.1 IUBMB
Fragment: UNP residues 27-365
Gene Name(s): AAK1 Gene View KIAA1048
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
XIN
Query on XIN

A methyl (3Z)-3-{[(4-{methyl[(4-methylpiperazin- 1-yl)acetyl]amino}phenyl)amino](phenyl)methylidene}- 2-oxo-2,3-dihydro-1H-indole-6-carboxylate
C31 H33 N5 O4
XZXHXSATPCNXJR-ZIADKAODSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PEG
Query on PEG

A DI(HYDROXYETHYL)ETHER
C4 H10 O3
MTHSVFCYNBDYFN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.199
  • R-Value Work: 0.181
  • Space Group: I 2 2 2

Unit Cell:

Length (Å) Angle (°)
a = 70.46 α = 90.00
b = 119.47 β = 90.00
c = 125.04 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-09-20
  • Released Date: 2016-11-02
  • Deposition author(s): Counago, R.M., Elkins, J.M., Bountra, C., Arruda, P., Edwards, A.M., Gileadi, O., Structural Genomics Consortium (SGC)

Revision History

  • Version 1_0: 2016-11-02

    Type: Initial release